Protein,Gene,n.mutated.samples,Fold.change,adj.p.BH ACC1,ACACA,72,1.07,7.25E-01 ACCPS79,ACACA,72,1.04,8.01E-01 ACCPS79,ACACB,82,1.05,5.90E-01 AKT,AKT1,31,0.95,8.01E-01 AKTPS473,AKT1,31,1.46,1.85E-01 AKTPT308,AKT1,31,1.39,1.77E-01 PRAS40PT246,AKT1S1,6,0.86,1.26E-01 AKT,AKT2,24,0.95,6.49E-01 AKTPS473,AKT2,24,1.04,9.24E-01 AKTPT308,AKT2,24,1.06,8.95E-01 AKT,AKT3,31,0.9,1.58E-01 AKTPS473,AKT3,31,1.05,8.95E-01 AKTPT308,AKT3,31,1.03,9.24E-01 ANNEXINVII,ANXA7,15,0.92,1.15E-01 AR,AR,47,0.85,2.61E-01 ARAFPS299,ARAF,24,0.92,6.37E-02 ARID1A,ARID1A,172,0.9,8.24E-10 ASNS,ASNS,23,1.1,8.01E-01 ATM,ATM,111,0.74,7.99E-06 BADPS112,BAD,5,0.91,8.01E-01 BAK,BAK1,8,1.32,8.01E-01 BAP1C4,BAP1,64,0.81,1.31E-05 BAX,BAX,7,1.06,8.41E-01 BCL2,BCL2,4,0.8,7.25E-01 BCLXL,BCL2L1,11,1.24,2.09E-01 BIM,BCL2L11,17,1.07,6.74E-01 BECLIN,BECN1,15,0.99,9.24E-01 BID,BID,13,0.91,3.51E-01 CIAP,BIRC2,20,1.03,8.66E-01 BRAF,BRAF,50,0.98,8.95E-01 BRCA2,BRCA2,93,0.99,8.88E-01 TIGAR,C12ORF5,7,1.04,8.88E-01 CASPASE7CLEAVEDD198,CASP7,9,1.85,3.89E-01 CAVEOLIN1,CAV1,6,0.55,3.89E-01 CYCLINB1,CCNB1,16,1.91,1.14E-02 CYCLIND1,CCND1,21,1.08,2.87E-01 CYCLINE1,CCNE1,19,1.12,7.25E-01 CYCLINE2,CCNE2,14,1.17,1.18E-01 ECADHERIN,CDH1,79,0.55,9.49E-05 NCADHERIN,CDH2,58,0.96,8.01E-01 PCADHERIN,CDH3,27,0.98,8.63E-01 CDK1,CDK1,8,1.09,5.71E-01 P21,CDKN1A,17,1.02,9.19E-01 P27,CDKN1B,21,0.97,8.88E-01 P27PT157,CDKN1B,21,1,9.85E-01 P27PT198,CDKN1B,21,1.09,8.65E-02 CHK1,CHEK1,13,1.04,8.01E-01 CHK1PS345,CHEK1,13,1.01,8.88E-01 CHK2,CHEK2,29,0.99,9.42E-01 CHK2PT68,CHEK2,29,1,9.85E-01 CLAUDIN7,CLDN7,5,0.95,9.24E-01 COLLAGENVI,COL6A1,31,0.85,1.91E-01 BETACATENIN,CTNNB1,95,1.06,7.25E-01 DVL3,DVL3,29,1.03,8.25E-01 EEF2,EEF2,25,1.39,8.65E-02 EEF2K,EEF2K,27,0.91,6.49E-01 EGFR,EGFR,111,1.82,2.72E-10 EGFRPY1068,EGFR,111,3.62,3.47E-10 EGFRPY1173,EGFR,111,2.51,3.49E-08 EIF4E,EIF4E,6,1.16,5.25E-01 4EBP1,EIF4EBP1,3,1.62,8.01E-01 4EBP1PS65,EIF4EBP1,3,1.01,9.42E-01 4EBP1PT37T46,EIF4EBP1,3,1.06,9.16E-01 4EBP1PT70,EIF4EBP1,3,1.14,8.50E-01 EIF4G,EIF4G1,52,1.01,9.16E-01 HER2,ERBB2,61,1.23,8.65E-02 HER2PY1248,ERBB2,61,1.17,3.19E-01 HER3,ERBB3,67,0.91,2.87E-01 HER3PY1289,ERBB3,67,0.98,8.01E-01 MIG6,ERRFI1,10,0.99,9.24E-01 ERALPHA,ESR1,31,1.14,8.41E-01 ERALPHAPS118,ESR1,31,1.1,5.18E-01 ETS1,ETS1,29,0.93,7.25E-01 FASN,FASN,39,1.13,8.01E-01 FIBRONECTIN,FN1,92,0.8,9.16E-04 FOXM1,FOXM1,25,1.03,8.88E-01 FOXO3A,FOXO3,17,1.05,5.54E-01 FOXO3APS318S321,FOXO3,17,1.02,8.88E-01 G6PD,G6PD,21,1.03,9.16E-01 GAB2,GAB2,26,0.96,8.88E-01 GAPDH,GAPDH,9,1.54,5.09E-01 GATA3,GATA3,102,3.32,2.83E-18 GSK3ALPHABETA,GSK3A,21,0.99,8.95E-01 GSK3ALPHABETAPS21S9,GSK3A,21,1.05,8.88E-01 GSK3PS9,GSK3A,21,0.97,9.24E-01 GSK3ALPHABETA,GSK3B,21,0.97,8.01E-01 GSK3ALPHABETAPS21S9,GSK3B,21,1.09,6.91E-01 GSK3PS9,GSK3B,21,0.97,8.95E-01 HSP70,HSPA1A,3,0.7,8.01E-01 IGFBP2,IGFBP2,10,0.87,8.41E-01 INPP4B,INPP4B,43,0.82,1.91E-01 IRS1,IRS1,48,0.97,8.01E-01 CD49B,ITGA2,44,1.02,8.88E-01 CJUNPS73,JUN,11,0.9,3.32E-01 VEGFR2,KDR,77,0.93,5.09E-01 CKIT,KIT,45,0.89,3.19E-01 LCK,LCK,24,1.05,8.01E-01 MEK1,MAP2K1,17,1.04,8.88E-01 MEK1PS217S221,MAP2K1,17,1,9.85E-01 ERK2,MAPK1,14,0.95,8.95E-01 MAPKPT202Y204,MAPK1,14,0.77,3.89E-01 P38MAPK,MAPK14,16,0.93,3.61E-01 P38PT180Y182,MAPK14,16,0.81,2.20E-01 MAPKPT202Y204,MAPK3,14,0.89,8.50E-01 JNKPT183Y185,MAPK8,23,0.92,3.19E-01 JNK2,MAPK9,23,1.02,8.88E-01 CMETPY1235,MET,48,1.01,8.41E-01 MRE11,MRE11A,24,0.92,9.23E-02 CD20,MS4A1,22,0.99,9.42E-01 MTOR,MTOR,101,1,9.85E-01 MTORPS2448,MTOR,101,0.99,8.41E-01 CMYC,MYC,18,0.94,7.25E-01 MYH11,MYH11,102,1.01,9.85E-01 MYOSINIIAPS1943,MYH9,76,1.01,8.88E-01 NDRG1PT346,NDRG1,22,0.65,1.15E-01 NF2,NF2,26,0.97,8.66E-01 NFKBP65PS536,NFKB1,24,0.91,6.98E-01 NOTCH1,NOTCH1,93,0.97,3.19E-01 NRAS,NRAS,28,0.99,8.95E-01 HEREGULIN,NRG1,53,0.93,6.37E-02 DJ1,PARK7,2,1.09,9.19E-01 PCNA,PCNA,10,1.23,1.26E-01 PDCD4,PDCD4,14,0.92,8.01E-01 PDK1,PDK1,10,0.92,5.21E-01 PDK1PS241,PDK1,10,0.9,4.55E-01 PEA15,PEA15,5,0.97,9.24E-01 PEA15PS116,PEA15,5,0.68,5.18E-01 CD31,PECAM1,0,NA,NA PR,PGR,32,0.98,6.90E-01 PI3KP110ALPHA,PIK3CA,471,1.01,8.01E-01 PI3KP85,PIK3R1,127,0.93,1.78E-02 PI3KP85,PIK3R2,22,0.95,6.86E-01 PRDX1,PRDX1,8,0.97,9.24E-01 AMPKALPHA,PRKAA1,14,1.03,8.95E-01 AMPKPT172,PRKAA1,14,0.99,9.85E-01 PKCALPHA,PRKCA,22,1.02,8.97E-01 PKCALPHAPS657,PRKCA,22,1.03,8.88E-01 PKCPANBETAIIPS660,PRKCA ,0,NA,NA PKCPANBETAIIPS660,PRKCB,56,1.02,8.97E-01 PKCDELTAPS664,PRKCD,23,0.98,8.63E-01 PKCPANBETAIIPS660,PRKCD,23,0.96,8.88E-01 PKCPANBETAIIPS660,PRKCE,35,1.01,9.42E-01 PKCPANBETAIIPS660,PRKCH,22,1.02,9.27E-01 PKCPANBETAIIPS660,PRKCQ,37,0.92,5.18E-01 PTEN,PTEN,243,0.74,9.38E-22 PAXILLIN,PXN,18,0.93,6.90E-01 RAB11,RAB11A,7,0.98,9.05E-01 RAB11,RAB11B,6,0.85,5.37E-01 RAB25,RAB25,7,1.01,9.85E-01 RAD50,RAD50,41,1.11,6.90E-01 RAD51,RAD51,12,1.01,9.76E-01 CRAF,RAF1,18,1,9.85E-01 CRAFPS338,RAF1,18,1,9.42E-01 RBPS807S811,RB1,86,1.02,8.88E-01 RBM15,RBM15,34,1.04,8.88E-01 RICTOR,RICTOR,57,1.1,6.09E-01 RICTORPT1135,RICTOR,57,0.96,1.34E-01 S6,RPS6,11,1.64,3.34E-02 S6PS235S236,RPS6,11,1,9.85E-01 S6PS240S244,RPS6,11,1.11,8.01E-01 P90RSK,RPS6KA1,19,1.09,5.09E-01 P90RSKPT359S363,RPS6KA1,19,0.96,8.01E-01 P70S6K,RPS6KB1,16,1.06,5.25E-01 P70S6KPT389,RPS6KB1,16,0.88,1.26E-01 RAPTOR,RPTOR,45,0.93,3.54E-01 SCD1,SCD,12,1.05,8.27E-01 PAI1,SERPINE1,22,0.8,3.54E-01 SHCPY317,SHC1,19,0.87,1.50E-01 SMAD1,SMAD1,15,1.08,4.28E-01 SMAD3,SMAD3,32,0.99,9.53E-01 SMAD4,SMAD4,48,0.95,8.65E-02 P62LCKLIGAND,SQSTM1,16,1.06,8.88E-01 SRC,SRC,24,1.05,7.67E-01 SRCPY416,SRC,24,1.12,5.25E-01 SRCPY527,SRC,24,1.23,3.89E-01 SF2,SRSF1,12,0.95,5.21E-01 STAT3PY705,STAT3,32,0.88,2.98E-01 STAT5ALPHA,STAT5A,14,1.09,7.57E-01 LKB1,STK11,25,0.9,7.16E-02 STATHMIN,STMN1,7,1,9.85E-01 SYK,SYK,24,1.05,8.01E-01 TFRC,TFRC,22,1.68,9.23E-02 TRANSGLUTAMINASE,TGM2,32,0.92,6.25E-01 P53,TP53,981,1.29,1.49E-57 53BP1,TP53BP1,51,1,9.85E-01 TSC1,TSC1,42,0.95,6.09E-01 TUBERIN,TSC2,50,0.93,3.89E-01 TUBERINPT1462,TSC2,50,0.94,4.08E-01 ACETYLATUBULINLYS40,TUBA1A,17,1.46,1.77E-01 ACETYLATUBULINLYS40,TUBA1B,9,1.08,8.95E-01 ACETYLATUBULINLYS40,TUBA1C,14,1.04,9.27E-01 ACETYLATUBULINLYS40,TUBA3C,45,0.99,9.85E-01 ACETYLATUBULINLYS40,TUBA3D,24,1.38,2.09E-01 ACETYLATUBULINLYS40,TUBA3E,22,1.21,4.55E-01 ACETYLATUBULINLYS40,TUBA4A,23,1.14,8.01E-01 ACETYLATUBULINLYS40,TUBA8,14,1.47,3.32E-01 VHL,VHL,209,0.84,2.62E-02 TAZ,WWTR1,12,0.86,7.52E-03 XBP1,XBP1,8,1.02,8.95E-01 XRCC1,XRCC1,13,1.05,8.25E-01 KU80,XRCC5,19,1.13,4.15E-01 YAP,YAP1,14,0.97,8.88E-01 YAPPS127,YAP1,14,0.95,8.66E-01 YB1,YBX1,15,1.13,3.19E-01 YB1PS102,YBX1,15,0.97,7.25E-01 1433EPSILON,YWHAE,16,1.03,8.41E-01